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apollo.util
Class FastaHeader

java.lang.Object
  extended by apollo.util.FastaHeader

public class FastaHeader
extends java.lang.Object

Field Summary
protected static org.apache.log4j.Logger logger
           
 
Constructor Summary
FastaHeader(java.lang.String fasta_header)
           
 
Method Summary
 SequenceI generateSequence()
           
 java.lang.String getDatabase()
           
 java.util.HashMap getDbXrefs()
           
 java.lang.String getDescription()
           
 java.lang.String getOrganism()
           
 java.lang.String getSeqId()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

logger

protected static final org.apache.log4j.Logger logger
Constructor Detail

FastaHeader

public FastaHeader(java.lang.String fasta_header)
Method Detail

getSeqId

public java.lang.String getSeqId()

getDescription

public java.lang.String getDescription()

getDatabase

public java.lang.String getDatabase()

getDbXrefs

public java.util.HashMap getDbXrefs()

getOrganism

public java.lang.String getOrganism()

generateSequence

public SequenceI generateSequence()
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