apollo.gui.tweeker
Class CutSite

java.lang.Object
  apollo.datamodel.Range
      apollo.gui.tweeker.CutSite

All Implemented Interfaces:

RangeI, java.io.Serializable, java.lang.Cloneable

public class CutSite
extends Range

See Also:

Serialized Form

Field Summary

Fields inherited from class apollo.datamodel.Range

high, logger, low, name, refSeq, strand, type

Fields inherited from interface apollo.datamodel.RangeI

NO_NAME, NO_TYPE

Constructor Summary

CutSite(int start, int end, RestrictionEnzyme enzyme)

Method Summary

boolean	exportFragment()
void	exportFragment(boolean export)
RestrictionEnzyme	getRestrictionEnzyme()
boolean	isPalindrome()
void	setPalindromic(boolean palindrome)

Methods inherited from class apollo.datamodel.Range

canHaveChildren, contains, contains, convertFromBaseOrientedToInterbase, convertFromInterbaseToBaseOriented, getEnd, getEndAsString, getFeatureType, getHigh, getLeftOverlap, getLow, getName, getRangeClone, getRefSequence, getResidues, getRightOverlap, getStart, getStartAsString, getStrand, hasFeatureType, hasName, hasRefSequence, isContainedByRefSeq, isExactOverlap, isForwardStrand, isIdentical, isSequenceAvailable, length, overlaps, rangeIsUnassigned, sameRange, setEnd, setFeatureType, setHigh, setLow, setName, setRefSequence, setStart, setStrand, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

CutSite

public CutSite(int start,
               int end,
               RestrictionEnzyme enzyme)

Method Detail

getRestrictionEnzyme

public RestrictionEnzyme getRestrictionEnzyme()

isPalindrome

public boolean isPalindrome()

setPalindromic

public void setPalindromic(boolean palindrome)

exportFragment

public void exportFragment(boolean export)

exportFragment

public boolean exportFragment()