apollo.gui.synteny
Class GuiCurationState

java.lang.Object
  apollo.gui.synteny.GuiCurationState

public class GuiCurationState
extends java.lang.Object

Holds stuff needed for each curation-set/apollo-panel/szap/"species". should this subclass CurationState?

Method Summary

void	addAnnotationEditor(AnnotationEditor ae, boolean forwardStrand)
AnnotationEditor	getAnnotationEditor(boolean forwardStrand)
Controller	getController()
java.lang.String	getCurationName()
CurationSet	getCurationSet()
ApolloDataAdapterI	getDataAdapter()
FeatureTreeFrame	getFeatureTreeFrame()
ApolloNameAdapterI	getNameAdapter(AnnotatedFeatureI af)
NavigationBar	getNavigationBar() navigation bar on top of szap - should this be multi cur set?
PropertyScheme	getPropertyScheme()
SelectionManager	getSelectionManager()
Style	getStyle() does the data adapter have the right style? check this
StrandedZoomableApolloPanel	getSZAP()
TransactionManager	getTransactionManager()
boolean	haveAnnots() Returns true if curSet have >0 annotations
boolean	haveSequence() Whether curationSet has ref sequence (formerly in ApolloFrame)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getController

public Controller getController()

getSelectionManager

public SelectionManager getSelectionManager()

getCurationName

public java.lang.String getCurationName()

getSZAP

public StrandedZoomableApolloPanel getSZAP()

getNavigationBar

public NavigationBar getNavigationBar()

navigation bar on top of szap - should this be multi cur set?

getDataAdapter

public ApolloDataAdapterI getDataAdapter()

getStyle

public Style getStyle()

does the data adapter have the right style? check this

getPropertyScheme

public PropertyScheme getPropertyScheme()

getNameAdapter

public ApolloNameAdapterI getNameAdapter(AnnotatedFeatureI af)

getTransactionManager

public TransactionManager getTransactionManager()

getCurationSet

public CurationSet getCurationSet()

getFeatureTreeFrame

public FeatureTreeFrame getFeatureTreeFrame()

addAnnotationEditor

public void addAnnotationEditor(AnnotationEditor ae,
                                boolean forwardStrand)

getAnnotationEditor

public AnnotationEditor getAnnotationEditor(boolean forwardStrand)

haveSequence

public boolean haveSequence()

Whether curationSet has ref sequence (formerly in ApolloFrame)

haveAnnots

public boolean haveAnnots()

Returns true if curSet have >0 annotations