apollo.gui.genomemap
Class ResultView

java.lang.Object
  apollo.gui.genomemap.LinearView
      apollo.gui.genomemap.ManagedView
          apollo.gui.genomemap.TierView
              apollo.gui.genomemap.FeatureView
                  apollo.gui.genomemap.ResultView

All Implemented Interfaces:

ResultChangeListener, ControlledObjectI, TierManagerListener, DropTargetViewI, KeyViewI, ManagedViewI, PickViewI, PopupViewI, SelectViewI, TierViewI, ViewI, java.awt.event.AdjustmentListener, java.io.Serializable, java.util.EventListener

public class ResultView
extends FeatureView
implements KeyViewI, ResultChangeListener

An extension of FeatureView for drawing analysis results.

See Also:

Serialized Form

Field Summary

protected AnnotationView	annotationView
protected static org.apache.log4j.Logger	logger

Fields inherited from class apollo.gui.genomemap.FeatureView

dfset, drawables, pickSize

Fields inherited from class apollo.gui.genomemap.TierView

controller, dragSources, rightSide, selectionManager, vScroll, vscrollable

Fields inherited from class apollo.gui.genomemap.ManagedView

dropSpaceSize, leadSpaceSize, manager, visibleDrawables

Fields inherited from class apollo.gui.genomemap.LinearView

apollo_panel, backgroundColour, debug, foregroundColour, graphics, limitsSet, transformer, transparent, viewBounds, visibilityListeners, visible

Fields inherited from interface apollo.gui.genomemap.ViewI

LEFTSIDE, NONE, RIGHTSIDE

Constructor Summary

ResultView(javax.swing.JComponent ap, java.lang.String name, SelectionManager selectionManager)

Method Summary

protected void	clear(boolean justFeatures) Clear out mem leaks
protected javax.swing.JPopupMenu	createPopupMenu(ApolloPanelI ap, java.awt.event.MouseEvent evt) This is overridden by ResultView and AnnotView - make abstract?
AnnotationView	getAnnotationView()
FeatureSetI	getTopModel() Returns the topmost model object of the result view, the FeatureSet that holds all of the tiers, (just dfset.getFeatureSet())
boolean	handleResultChangeEvent(ResultChangeEvent evt)
void	keyPressed(java.awt.event.KeyEvent evt) If return is pressed then take the current selection and make it a new annotation.
void	setAnnotationView(AnnotationView av)

Methods inherited from class apollo.gui.genomemap.FeatureView

beginTierDrag, clear, clearEdges, clearFeatures, clearHighlights, drawDragRectangle, endTierDrag, finalize, findDrawables, findFeaturesForSelection, getDrawableSet, getPreferredSize, getTierYCentre, getViewSelection, needsTextAvoidUpdate, paintView, putScrollAtStart, select, setBounds, setCentre, setDrawableSet, setMatchingEdges, setTextAvoidance, setXOrientation, setZoomFactor, showPopupMenu, updateTierDrag, verticalScrollToSelection, verticalScrollToSelection

Methods inherited from class apollo.gui.genomemap.TierView

addScrollBar, adjustmentValueChanged, allowsTierDrags, changeTierHeight, createDragView, decrementTierHeight, drawablesForDrag, findDrawables, findDrawables, findFeatures, findFeatures, findFeatures, findFeaturesForSelection, findFeaturesForSelection, fireViewEvent, getController, getControllerWindow, getInvertedScrollbarValue, getLowestVisibleTier, getMaxScrollbarValue, getMinScrollbarValue, getScrollbarValue, getVisibleScrollbarValue, handleTierManagerEvent, incrementTierHeight, interpretDrop, interpretDrop, isDownOrientation, isUpOrientation, isValidDragSource, moveScrollbarByWheelAmount, needsAutoRemoval, printScrollValues, registerDragSource, setController, setLowestVisibleTier, setScrollbarValue, setScrollHack, setScrollSide, setScrollValues, setScrollVisibility, setSelectionManager, setTierManager, setVisible, setVScrollable, setYOrientation, updateManagerHeight

Methods inherited from class apollo.gui.genomemap.ManagedView

getDropSpaceSize, getLeadSpaceSize, getTierManager, getVisibleDrawables, getYRange, paintDrawables, setDropSpaceSize, setLeadSpaceSize, setTierManager

Methods inherited from class apollo.gui.genomemap.LinearView

addViewListener, addVisibilityListener, areLimitsSet, fireViewEvent, getBackgroundColour, getBounds, getCentre, getComponent, getDrawBounds, getForegroundColour, getGraphics, getLimits, getMaximum, getMinimum, getName, getSelectionRectangle, getStrand, getTransform, getVisibleRange, init, isInvalid, isTransparent, isVisible, setBackgroundColour, setComponent, setDebug, setDrawBounds, setForegroundColour, setGraphics, setInvalidity, setLimits, setLimitsSet, setMaximum, setMinimum, setName, setStrand, setTransform, setTransparent, setVisible

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface apollo.gui.genomemap.TierViewI

allowsTierDrags, createDragView, decrementTierHeight, getLowestVisibleTier, getVisibleDrawables, incrementTierHeight, setLowestVisibleTier

Methods inherited from interface apollo.gui.genomemap.ManagedViewI

getTierManager, setTierManager

Methods inherited from interface apollo.gui.genomemap.ViewI

addViewListener, areLimitsSet, getBounds, getCentre, getComponent, getLimits, getMaximum, getMinimum, getName, getTransform, getVisibleRange, isInvalid, isTransparent, isVisible, setComponent, setGraphics, setInvalidity, setLimits, setLimitsSet, setMaximum, setMinimum, setName, setTransparent, setVisible

Field Detail

logger

protected static final org.apache.log4j.Logger logger

annotationView

protected AnnotationView annotationView

Constructor Detail

ResultView

public ResultView(javax.swing.JComponent ap,
                  java.lang.String name,
                  SelectionManager selectionManager)

Method Detail

setAnnotationView

public void setAnnotationView(AnnotationView av)

getAnnotationView

public AnnotationView getAnnotationView()

getTopModel

public FeatureSetI getTopModel()

Returns the topmost model object of the result view, the FeatureSet that holds all of the tiers, (just dfset.getFeatureSet())

Overrides:

getTopModel in class FeatureView

createPopupMenu

protected javax.swing.JPopupMenu createPopupMenu(ApolloPanelI ap,
                                                 java.awt.event.MouseEvent evt)

Description copied from class: FeatureView

This is overridden by ResultView and AnnotView - make abstract?

Specified by:

createPopupMenu in class FeatureView

clear

protected void clear(boolean justFeatures)

Clear out mem leaks

Overrides:

clear in class FeatureView

keyPressed

public void keyPressed(java.awt.event.KeyEvent evt)

If return is pressed then take the current selection and make it a new annotation. Who knew about this functionality?

Specified by:

keyPressed in interface KeyViewI

handleResultChangeEvent

public boolean handleResultChangeEvent(ResultChangeEvent evt)

Specified by:

handleResultChangeEvent in interface ResultChangeListener