apollo.gui.genomemap
Class DiscreteGraphView

java.lang.Object
  apollo.gui.genomemap.LinearView
      apollo.gui.genomemap.ScrollAdjustedView
          apollo.gui.genomemap.GraphView
              apollo.gui.genomemap.DiscreteGraphView

All Implemented Interfaces:

ViewI, java.util.EventListener, javax.swing.event.ChangeListener

public class DiscreteGraphView
extends GraphView

This is a view for a discrete graph

Author:

elee

Field Summary

Fields inherited from class apollo.gui.genomemap.ScrollAdjustedView

prefHeight, reverseComplement, scroller

Fields inherited from class apollo.gui.genomemap.LinearView

apollo_panel, backgroundColour, debug, foregroundColour, graphics, limitsSet, logger, transformer, transparent, viewBounds, visibilityListeners, visible

Fields inherited from interface apollo.gui.genomemap.ViewI

LEFTSIDE, NONE, RIGHTSIDE

Constructor Summary

DiscreteGraphView(javax.swing.JComponent ap, java.lang.String name, java.awt.Color plotColour, Transformer scaler)
Construct a new DiscreteGraphView object

Method Summary

void	paintView() Paints the graph
void	setVisible(boolean state, boolean remove)

Methods inherited from class apollo.gui.genomemap.GraphView

clear, getPlotColour, getScoreCalculator, setPlotColour, setScoreCalculator, setXOrientation, stateChanged

Methods inherited from class apollo.gui.genomemap.ScrollAdjustedView

featureContains, getPreferredSize, setDrawBounds, setScrollFlag, setScrollSpace

Methods inherited from class apollo.gui.genomemap.LinearView

addViewListener, addVisibilityListener, areLimitsSet, fireViewEvent, getBackgroundColour, getBounds, getCentre, getComponent, getDrawBounds, getForegroundColour, getGraphics, getLimits, getMaximum, getMinimum, getName, getSelectionRectangle, getStrand, getTransform, getVisibleRange, init, isInvalid, isTransparent, isVisible, setBackgroundColour, setBounds, setCentre, setComponent, setDebug, setForegroundColour, setGraphics, setInvalidity, setLimits, setLimitsSet, setMaximum, setMinimum, setName, setStrand, setTransform, setTransparent, setVisible, setZoomFactor

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DiscreteGraphView

public DiscreteGraphView(javax.swing.JComponent ap,
                         java.lang.String name,
                         java.awt.Color plotColour,
                         Transformer scaler)

Construct a new DiscreteGraphView object

Parameters:

ap - - ApolloPanel to display graph on

name - - name of graph

plotColour - - color for the graph (axis will be that color, peaks will be darker)

scaler - - Transformer for the display's scale to be used for centering peaks at tick marks

Method Detail

paintView

public void paintView()

Paints the graph

Specified by:

paintView in interface ViewI

Overrides:

paintView in class GraphView

setVisible

public void setVisible(boolean state,
                       boolean remove)

Overrides:

setVisible in class LinearView