apollo.gui.drawable
Class DrawableUtil

java.lang.Object
  apollo.gui.drawable.DrawableUtil

public class DrawableUtil
extends java.lang.Object

Field Summary

protected static org.apache.log4j.Logger	logger
static java.awt.Color	unconventionalPurple

Constructor Summary

DrawableUtil()

Method Summary

static Drawable	createDrawable(SeqFeatureI sf) Creates and returns a DrawableFeatureSet from a FeatureSetI.
static Drawable	createGlyph(java.lang.String glyph_name) Glyph name may be whole path (apollo.gui.drawable.Zigzag), just the class name(Zigzag)
static java.awt.Rectangle	getBoxBounds(java.util.Vector drawables, Transformer transformer, TierManagerI manager) This is for creating drag boxes.
static java.awt.Color	getFeatureColor(SeqFeatureI feature, FeatureProperty fp)
static java.awt.Color	getStartCodonColor(FeatureSetI fs)
static int	getTierYCentrePixel(int tierNum, Transformer transformer, TierManagerI manager) Return y value for middle of tier, not feature.
static void	setBoxBounds(Drawable dsf, Transformer transformer, TierManagerI manager)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected static final org.apache.log4j.Logger logger

unconventionalPurple

public static java.awt.Color unconventionalPurple

Constructor Detail

DrawableUtil

public DrawableUtil()

Method Detail

setBoxBounds

public static void setBoxBounds(Drawable dsf,
                                Transformer transformer,
                                TierManagerI manager)

getBoxBounds

public static java.awt.Rectangle getBoxBounds(java.util.Vector drawables,
                                              Transformer transformer,
                                              TierManagerI manager)

This is for creating drag boxes. All the dimensions matter. Returns a union of all the drawables bounds in pixels.

getTierYCentrePixel

public static int getTierYCentrePixel(int tierNum,
                                      Transformer transformer,
                                      TierManagerI manager)

Return y value for middle of tier, not feature. This may not be the middle of the feature. There is one midpoint for the tier, but features of different widths have different middles. Need to use tier midpoint to ensure intron lines collapse to the same line when tier is collapsed

createDrawable

public static Drawable createDrawable(SeqFeatureI sf)

Creates and returns a DrawableFeatureSet from a FeatureSetI. Changed return type from FeatureSetI to DrawableFeatureSet

createGlyph

public static Drawable createGlyph(java.lang.String glyph_name)

Glyph name may be whole path (apollo.gui.drawable.Zigzag), just the class name(Zigzag)

getStartCodonColor

public static java.awt.Color getStartCodonColor(FeatureSetI fs)

getFeatureColor

public static java.awt.Color getFeatureColor(SeqFeatureI feature,
                                             FeatureProperty fp)