apollo.gui.detailviewers.sequencealigner.actions
Class FrameShiftAction

java.lang.Object
  javax.swing.AbstractAction
      apollo.gui.detailviewers.sequencealigner.actions.FrameShiftAction

All Implemented Interfaces:

java.awt.event.ActionListener, java.io.Serializable, java.lang.Cloneable, java.util.EventListener, javax.swing.Action

public class FrameShiftAction
extends javax.swing.AbstractAction

An Action class for performing a frame shift on a feature NOTE: I think that there might be some kind of limit to the number of frame shifts allowed on a feature.

See Also:

Serialized Form

Nested Class Summary

static class

FrameShiftAction.FrameShiftType

Field Summary

Fields inherited from class javax.swing.AbstractAction

changeSupport, enabled

Fields inherited from interface javax.swing.Action

ACCELERATOR_KEY, ACTION_COMMAND_KEY, DEFAULT, LONG_DESCRIPTION, MNEMONIC_KEY, NAME, SHORT_DESCRIPTION, SMALL_ICON

Constructor Summary

FrameShiftAction(java.lang.String name, GuiCurationState curationState, AnnotationEditor annotationEditor, FrameShiftAction.FrameShiftType shiftType)
Constructor

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e) Performs the insertion
void	setFeature(SeqFeatureI feature) Sets what feature the frame shift will be added to
void	setSelectedBasePair(int basepair) Sets the location of the frame shift
void	setShiftType(FrameShiftAction.FrameShiftType shiftType) Sets the shift type for this action

Methods inherited from class javax.swing.AbstractAction

addPropertyChangeListener, clone, firePropertyChange, getKeys, getPropertyChangeListeners, getValue, isEnabled, putValue, removePropertyChangeListener, setEnabled

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FrameShiftAction

public FrameShiftAction(java.lang.String name,
                        GuiCurationState curationState,
                        AnnotationEditor annotationEditor,
                        FrameShiftAction.FrameShiftType shiftType)

Constructor

Parameters:

name - the name of this action

curationState - the curation state

annotationEditor - the annotation editor

plus1 - true if this will perform a +1 frame shift

Method Detail

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

Performs the insertion

setFeature

public void setFeature(SeqFeatureI feature)

Sets what feature the frame shift will be added to

Parameters:

feature -

setSelectedBasePair

public void setSelectedBasePair(int basepair)

Sets the location of the frame shift

Parameters:

basepair - genomic coordinates NOTE: Does it only make sense to have a frame shift in an exon?

setShiftType

public void setShiftType(FrameShiftAction.FrameShiftType shiftType)

Sets the shift type for this action

Parameters:

shiftType -