apollo.gui.detailviewers.sequencealigner
Class AnnotationEditorMouseListener

java.lang.Object
  javax.swing.event.MouseInputAdapter
      apollo.gui.detailviewers.sequencealigner.AnnotationEditorMouseListener

All Implemented Interfaces:

java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.util.EventListener, javax.swing.event.MouseInputListener

public class AnnotationEditorMouseListener
extends javax.swing.event.MouseInputAdapter

Class to handle mouse interactions for an annotation panel NOTE: It can be hard to keep track of what coordinate system you are working in. This should probably be cleaned up...

Field Summary

static int

MIN_FEATURE_SIZE

Constructor Summary

AnnotationEditorMouseListener(MultiTierPanel panel, GuiCurationState curationState, MultiSequenceAlignerPanel mainPanel)
Constructor

Method Summary

AnnotationEditor	getAnnotationEditor() Gets the annotation editor.
BaseScrollable	getScrollableObject() Gets the scrollable object that will be affected
int	getTier() Gets the current tier
void	mouseClicked(java.awt.event.MouseEvent e) Handles the mouse click events Middle mouse scrolls to where clicked Left mouse selects a feature Right mouse brings up popup menu
void	mouseDragged(java.awt.event.MouseEvent e) Handles the mouse drag events Left mouse dragging drags end of feature if drag type right or left boundary.
void	mouseMoved(java.awt.event.MouseEvent e) makes cursor hand if at the end of an exon using mouses position, does not change pos or tier variable
void	mousePressed(java.awt.event.MouseEvent e) Right mouse: highlight base.
void	mouseReleased(java.awt.event.MouseEvent e) If right mouse deselect base If end of feature drag notify AnnotationEditor (endRangeChange) and recalc translation end from start
static boolean	notTooSmall(int start_pos, int end_pos) returns true if the distance between the two end points (inclusive) is greater than or equal to MIN_FEATURE_SIZE
static void	recalcCDS(SeqFeatureI feature)
protected void	resetDragState()
void	scroll(int x, int y)
void	scrollLeft()
void	scrollRight()
int	selectHighPos()
int	selectLowPos()
void	setScrollableObject(BaseScrollable scrollableObject)

Methods inherited from class javax.swing.event.MouseInputAdapter

mouseEntered, mouseExited

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

MIN_FEATURE_SIZE

public static int MIN_FEATURE_SIZE

Constructor Detail

AnnotationEditorMouseListener

public AnnotationEditorMouseListener(MultiTierPanel panel,
                                     GuiCurationState curationState,
                                     MultiSequenceAlignerPanel mainPanel)

Constructor

Parameters:

panel -

curationState -

Method Detail

getAnnotationEditor

public AnnotationEditor getAnnotationEditor()

Gets the annotation editor.

Returns:

an annotation editor

getScrollableObject

public BaseScrollable getScrollableObject()

Gets the scrollable object that will be affected

Returns:

getTier

public int getTier()

Gets the current tier

Returns:

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent e)

Handles the mouse click events Middle mouse scrolls to where clicked Left mouse selects a feature Right mouse brings up popup menu

Specified by:

mouseClicked in interface java.awt.event.MouseListener

Overrides:

mouseClicked in class javax.swing.event.MouseInputAdapter

mouseDragged

public void mouseDragged(java.awt.event.MouseEvent e)

Handles the mouse drag events Left mouse dragging drags end of feature if drag type right or left boundary. DragType is figured in mousePressed TODO clean up!

Specified by:

mouseDragged in interface java.awt.event.MouseMotionListener

Overrides:

mouseDragged in class javax.swing.event.MouseInputAdapter

mouseMoved

public void mouseMoved(java.awt.event.MouseEvent e)

makes cursor hand if at the end of an exon using mouses position, does not change pos or tier variable

Specified by:

mouseMoved in interface java.awt.event.MouseMotionListener

Overrides:

mouseMoved in class javax.swing.event.MouseInputAdapter

mousePressed

public void mousePressed(java.awt.event.MouseEvent e)

Right mouse: highlight base. Left mouse: figure dragType, dragFeature, dragStartPos, startDragTier

Specified by:

mousePressed in interface java.awt.event.MouseListener

Overrides:

mousePressed in class javax.swing.event.MouseInputAdapter

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent e)

If right mouse deselect base If end of feature drag notify AnnotationEditor (endRangeChange) and recalc translation end from start

Specified by:

mouseReleased in interface java.awt.event.MouseListener

Overrides:

mouseReleased in class javax.swing.event.MouseInputAdapter

recalcCDS

public static void recalcCDS(SeqFeatureI feature)

resetDragState

protected void resetDragState()

selectHighPos

public int selectHighPos()

selectLowPos

public int selectLowPos()

setScrollableObject

public void setScrollableObject(BaseScrollable scrollableObject)

notTooSmall

public static boolean notTooSmall(int start_pos,
                                  int end_pos)

returns true if the distance between the two end points (inclusive) is greater than or equal to MIN_FEATURE_SIZE

scroll

public void scroll(int x,
                   int y)

scrollLeft

public void scrollLeft()

scrollRight

public void scrollRight()