apollo.editor
Class AddTransaction

java.lang.Object
  apollo.editor.Transaction
      apollo.editor.AddTransaction

All Implemented Interfaces:

java.io.Serializable

public class AddTransaction
extends Transaction

Transaction for adding a SeqFeatureI.

Author:

wgm

See Also:

Serialized Form

Field Summary

Fields inherited from class apollo.editor.Transaction

author, date, logger, NEW, newProperties, OLD, oldProperties

Constructor Summary

AddTransaction()

AddTransaction(java.lang.Object src, SeqFeatureI feat, TransactionSubpart subpart, java.lang.Object addedValue)

AddTransaction(java.lang.Object source, SeqFeatureI feature, TransactionSubpart subpart, java.lang.Object addedValue, int subpartRank)

AddTransaction(SeqFeatureI feature)

AddTransaction(SeqFeatureI feature, TransactionSubpart subpart)

AddTransaction(SeqFeatureI feature, TransactionSubpart subpart, java.lang.Object addedValue)

AddTransaction(SeqFeatureI feature, TransactionSubpart subpart, java.lang.Object addedValue, int subpartRank)

Method Summary

void	editModel()
AnnotationChangeEvent	generateAnnotationChangeEvent() sets ace source to trans source.
AnnotationChangeEvent	generateUndoChangeEvent() sets ace source to trans source.
SeqFeatureI	getAddedFeature()
SeqFeatureI	getAddedFeatureClone()
protected java.lang.String	getOperationString()
java.lang.String	getResidues() Seq errors insertion & substition include residues that need to be inserted with feature
boolean	isAdd()
boolean	isAddPeptide()
java.lang.String	oneLineSummary() Short (one-line) summary of the object; concise alternative to toString() that displays every instance variable set in one of the constructors, plus date and author.
void	setResidues(java.lang.String res)
void	undo() for now does nothing - subclasses implement

Methods inherited from class apollo.editor.Transaction

addProperty, generateAnnotationChangeEvent, generateUndoChangeEvent, getAuthor, getClassString, getDate, getDeletedFeature, getLeafTransactions, getNewId, getNewSplitFeature, getNewSubpartValue, getObjectClass, getOldComment, getOldId, getOldString, getOldSubpartValue, getOperation, getParentFeature, getParentFeatureClone, getParentTransaction, getProperty, getRank, getSeqFeature, getSeqFeatureClone, getSubpart, getSubpartRank, getSubpartString, getTransaction, hasKids, hasParentTransaction, isCompound, isDelete, isMerge, isSplit, isUpdate, isUpdateParent, setAuthor, setDate, setDate, setNewId, setNewSubpartValue, setObjectClass, setOldId, setOldSubpartValue, setOperation, setOperation, setParentFeature, setRank, setSeqFeature, setSource, setSubpart, setSubpartRank, size, subpartIsString, toString, toString, updateClonedTranscriptIdsAndNames

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AddTransaction

public AddTransaction()

AddTransaction

public AddTransaction(SeqFeatureI feature)

AddTransaction

public AddTransaction(SeqFeatureI feature,
                      TransactionSubpart subpart)

AddTransaction

public AddTransaction(SeqFeatureI feature,
                      TransactionSubpart subpart,
                      java.lang.Object addedValue)

AddTransaction

public AddTransaction(java.lang.Object src,
                      SeqFeatureI feat,
                      TransactionSubpart subpart,
                      java.lang.Object addedValue)

AddTransaction

public AddTransaction(SeqFeatureI feature,
                      TransactionSubpart subpart,
                      java.lang.Object addedValue,
                      int subpartRank)

AddTransaction

public AddTransaction(java.lang.Object source,
                      SeqFeatureI feature,
                      TransactionSubpart subpart,
                      java.lang.Object addedValue,
                      int subpartRank)

Method Detail

getAddedFeature

public SeqFeatureI getAddedFeature()

getAddedFeatureClone

public SeqFeatureI getAddedFeatureClone()

isAddPeptide

public boolean isAddPeptide()

Overrides:

isAddPeptide in class Transaction

getResidues

public java.lang.String getResidues()

Seq errors insertion & substition include residues that need to be inserted with feature

setResidues

public void setResidues(java.lang.String res)

isAdd

public boolean isAdd()

Overrides:

isAdd in class Transaction

generateAnnotationChangeEvent

public AnnotationChangeEvent generateAnnotationChangeEvent()

Description copied from class: Transaction

sets ace source to trans source. subclasses override this

generateUndoChangeEvent

public AnnotationChangeEvent generateUndoChangeEvent()

Description copied from class: Transaction

sets ace source to trans source. subclasses override this

editModel

public void editModel()

undo

public void undo()

Description copied from class: Transaction

for now does nothing - subclasses implement

getOperationString

protected java.lang.String getOperationString()

Overrides:

getOperationString in class Transaction

oneLineSummary

public java.lang.String oneLineSummary()

Short (one-line) summary of the object; concise alternative to toString() that displays every instance variable set in one of the constructors, plus date and author.

Overrides:

oneLineSummary in class Transaction