apollo.datamodel
Class Identifier

java.lang.Object
  apollo.datamodel.Identifier

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable

public class Identifier
extends java.lang.Object
implements java.io.Serializable, java.lang.Cloneable

See Also:

Serialized Form

Field Summary

protected static org.apache.log4j.Logger

logger

Constructor Summary

Identifier(java.lang.String description)

Method Summary

void	addDbXref(DbXref dbxref)
void	addSynonym(int index, java.lang.String syn)
void	addSynonym(int index, Synonym syn)
void	addSynonym(java.lang.String syn)
void	addSynonym(Synonym syn)
void	clearSynonyms()
java.lang.Object	clone()
void	deleteDbXref(DbXref dbxref)
void	deleteSynonym(java.lang.String nym)
void	deleteSynonym(Synonym nym)
java.util.Vector	getDbXrefs()
java.lang.String	getDescription()
java.util.Vector	getSynonyms() this returns all synonyms, both internal and external.
java.util.Vector	getSynonyms(boolean excludeInternalSynonyms) This used to return a clone, for no good reason that anyone can recall, so now it doesn't.
void	nullDbXrefs()
void	nullSynonyms()
void	setDescription(java.lang.String desc)
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

logger

protected static final org.apache.log4j.Logger logger

Constructor Detail

Identifier

public Identifier(java.lang.String description)

Method Detail

setDescription

public void setDescription(java.lang.String desc)

getDescription

public java.lang.String getDescription()

getSynonyms

public java.util.Vector getSynonyms()

this returns all synonyms, both internal and external. internal synonyms have the property "is_internal" set to 1

getSynonyms

public java.util.Vector getSynonyms(boolean excludeInternalSynonyms)

This used to return a clone, for no good reason that anyone can recall, so now it doesn't.

addSynonym

public void addSynonym(java.lang.String syn)

addSynonym

public void addSynonym(int index,
                       java.lang.String syn)

addSynonym

public void addSynonym(Synonym syn)

addSynonym

public void addSynonym(int index,
                       Synonym syn)

deleteSynonym

public void deleteSynonym(Synonym nym)

deleteSynonym

public void deleteSynonym(java.lang.String nym)

clearSynonyms

public void clearSynonyms()

nullSynonyms

public void nullSynonyms()

getDbXrefs

public java.util.Vector getDbXrefs()

addDbXref

public void addDbXref(DbXref dbxref)

deleteDbXref

public void deleteDbXref(DbXref dbxref)

nullDbXrefs

public void nullDbXrefs()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

clone

public java.lang.Object clone()

Overrides:

clone in class java.lang.Object