apollo.dataadapter.synteny
Class ChromosomeDrawer

java.lang.Object
  apollo.dataadapter.synteny.ChromosomeDrawer

public class ChromosomeDrawer
extends java.lang.Object

Constructor Summary

ChromosomeDrawer(Chromosome chromosome, java.util.Vector regions, java.util.Hashtable colours, boolean hit)

Method Summary

void	draw(java.awt.Graphics g, int x, int y, int width, int height)
SyntenyRegion	pixelBoxToRegion(int xpixel, int ypixel)
int	pixelToBase(int x, int y)
SyntenyRegion	pixelToRegion(int xpixel, int ypixel)
java.awt.Rectangle	regionToRectangle(SyntenyRegion reg)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ChromosomeDrawer

public ChromosomeDrawer(Chromosome chromosome,
                        java.util.Vector regions,
                        java.util.Hashtable colours,
                        boolean hit)

Method Detail

draw

public void draw(java.awt.Graphics g,
                 int x,
                 int y,
                 int width,
                 int height)

pixelToBase

public int pixelToBase(int x,
                       int y)

pixelToRegion

public SyntenyRegion pixelToRegion(int xpixel,
                                   int ypixel)

pixelBoxToRegion

public SyntenyRegion pixelBoxToRegion(int xpixel,
                                      int ypixel)

regionToRectangle

public java.awt.Rectangle regionToRectangle(SyntenyRegion reg)