apollo.dataadapter.otter.parser
Class GenericTagHandler

java.lang.Object
  apollo.dataadapter.otter.parser.TagHandler
      apollo.dataadapter.otter.parser.GenericTagHandler

public class GenericTagHandler
extends TagHandler

SequenceSets contain everything with a marker for an author - we map them to apollo GenericAnnotationSets

Field Summary

Fields inherited from class apollo.dataadapter.otter.parser.TagHandler

ACCESSION, ASSEMBLY_END, ASSEMBLY_START, ASSEMBLY_TYPE, AUTHOR, AUTHOR_EMAIL, CDS_END_NOT_FOUND, CDS_START_NOT_FOUND, CHROMOSOME, END, EVIDENCE, EXON, FRAGMENT_OFFSET, FRAGMENT_ORI, FRAME, ID, INDENT, KEYWORD, KNOWN, LEFT, LOCUS, LOCUS_TYPE, MRNA_END_NOT_FOUND, MRNA_START_NOT_FOUND, NAME, OTTER, REMARK, RETURN, RIGHT, SEQUENCE_FRAGMENT, SEQUENCE_SET, SLASH, STABLE_ID, START, STRAND, SYNONYM, TRANSCRIPT, TRANSCRIPT_CLASS, TRANSLATION_END, TRANSLATION_STABLE_ID, TRANSLATION_START, TYPE, VERSION

Constructor Summary

GenericTagHandler(java.lang.String newValue)

Method Summary

java.lang.String	getFullName()
java.lang.String	getLeafName()

Methods inherited from class apollo.dataadapter.otter.parser.TagHandler

appendCharacterBuffer, getCharacterBuffer, getCharacters, handleCharacters, handleEndElement, handleStartElement, setCharacterBuffer

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenericTagHandler

public GenericTagHandler(java.lang.String newValue)

Method Detail

getFullName

public java.lang.String getFullName()

Specified by:

getFullName in class TagHandler

getLeafName

public java.lang.String getLeafName()

Specified by:

getLeafName in class TagHandler