apollo.dataadapter.ensj.controller
Class Controller

java.lang.Object
  apollo.dataadapter.ensj.controller.Controller

public class Controller
extends java.lang.Object

Field Summary

static java.lang.String	CHANGE_DATABASE
static java.lang.String	CLEAR_SEQ_REGIONS
static java.lang.String	FIND_COORD_SYSTEMS
static java.lang.String	FIND_ENSEMBL_DATABASE_NAMES
static java.lang.String	FIND_SEQ_REGIONS
static java.lang.String	FIND_START_ENDS
static java.lang.String	HIDE_OR_SHOW_ANNOTATIONS
static java.lang.String	HIDE_OR_SHOW_DATABASE
static java.lang.String	HIDE_OR_SHOW_LOCATION
static java.lang.String	HIDE_OR_SHOW_OPTIONS
static java.lang.String	HIDE_OR_SHOW_TYPES
static java.lang.String	LOAD_SEQ_REGION_BY_HISTORY
protected static org.apache.log4j.Logger	logger
static java.lang.String	OPEN_FILE_CHOOSER
static java.lang.String	READ
static java.lang.String	SELECT_NEW_ENSEMBL_DATABASE
static java.lang.String	SELECT_SEQ_REGION
static java.lang.String	SHOW_AB_INITIO_COUNTS_BY_TYPE
static java.lang.String	SHOW_DITAG_FEATURE_COUNTS_BY_TYPE
static java.lang.String	SHOW_DNA_DNA_COUNTS_BY_TYPE
static java.lang.String	SHOW_DNA_PROTEIN_COUNTS_BY_TYPE
static java.lang.String	SHOW_GENE_COUNTS_BY_TYPE
static java.lang.String	SHOW_SIMPLE_FEATURE_COUNTS_BY_TYPE
static java.lang.String	UPDATE
static java.lang.String	USE_SEQ_REGION_LOCATION
static java.lang.String	USE_STABLE_ID_LOCATION

Constructor Summary

Controller(Model model, View view)

Method Summary

void	addActionRouter(javax.swing.JButton button, java.lang.String handlerKey)
void	addActionRouter(javax.swing.JComboBox dropDown, java.lang.String handlerKey)
void	addKeyRouter(java.awt.Component component, java.lang.String handlerKey)
void	addKeyRouter(javax.swing.JComboBox dropDown, java.lang.String handlerKey)
void	addKeyRouter(javax.swing.JTextField textField, java.lang.String handlerKey)
void	addPopupRouter(javax.swing.JComboBox dropDown, java.lang.String handlerKey)
void	displayMessage(java.lang.String message)
void	doRead()
void	doUpdate()
Model	getModel()
View	getView()
void	handleEventForKey(java.lang.String key)
void	log(java.lang.String message)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected static final org.apache.log4j.Logger logger

UPDATE

public static final java.lang.String UPDATE

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Constant Field Values

READ

public static final java.lang.String READ

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Constant Field Values

HIDE_OR_SHOW_TYPES

public static final java.lang.String HIDE_OR_SHOW_TYPES

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Constant Field Values

HIDE_OR_SHOW_OPTIONS

public static final java.lang.String HIDE_OR_SHOW_OPTIONS

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Constant Field Values

HIDE_OR_SHOW_DATABASE

public static final java.lang.String HIDE_OR_SHOW_DATABASE

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Constant Field Values

HIDE_OR_SHOW_LOCATION

public static final java.lang.String HIDE_OR_SHOW_LOCATION

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Constant Field Values

HIDE_OR_SHOW_ANNOTATIONS

public static final java.lang.String HIDE_OR_SHOW_ANNOTATIONS

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Constant Field Values

OPEN_FILE_CHOOSER

public static final java.lang.String OPEN_FILE_CHOOSER

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Constant Field Values

USE_STABLE_ID_LOCATION

public static final java.lang.String USE_STABLE_ID_LOCATION

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Constant Field Values

USE_SEQ_REGION_LOCATION

public static final java.lang.String USE_SEQ_REGION_LOCATION

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Constant Field Values

FIND_ENSEMBL_DATABASE_NAMES

public static final java.lang.String FIND_ENSEMBL_DATABASE_NAMES

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Constant Field Values

FIND_COORD_SYSTEMS

public static final java.lang.String FIND_COORD_SYSTEMS

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Constant Field Values

FIND_SEQ_REGIONS

public static final java.lang.String FIND_SEQ_REGIONS

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Constant Field Values

FIND_START_ENDS

public static final java.lang.String FIND_START_ENDS

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Constant Field Values

CHANGE_DATABASE

public static final java.lang.String CHANGE_DATABASE

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Constant Field Values

CLEAR_SEQ_REGIONS

public static final java.lang.String CLEAR_SEQ_REGIONS

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Constant Field Values

SELECT_SEQ_REGION

public static final java.lang.String SELECT_SEQ_REGION

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Constant Field Values

LOAD_SEQ_REGION_BY_HISTORY

public static final java.lang.String LOAD_SEQ_REGION_BY_HISTORY

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Constant Field Values

SELECT_NEW_ENSEMBL_DATABASE

public static final java.lang.String SELECT_NEW_ENSEMBL_DATABASE

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Constant Field Values

SHOW_GENE_COUNTS_BY_TYPE

public static final java.lang.String SHOW_GENE_COUNTS_BY_TYPE

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Constant Field Values

SHOW_DNA_PROTEIN_COUNTS_BY_TYPE

public static final java.lang.String SHOW_DNA_PROTEIN_COUNTS_BY_TYPE

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Constant Field Values

SHOW_DNA_DNA_COUNTS_BY_TYPE

public static final java.lang.String SHOW_DNA_DNA_COUNTS_BY_TYPE

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Constant Field Values

SHOW_SIMPLE_FEATURE_COUNTS_BY_TYPE

public static final java.lang.String SHOW_SIMPLE_FEATURE_COUNTS_BY_TYPE

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Constant Field Values

SHOW_DITAG_FEATURE_COUNTS_BY_TYPE

public static final java.lang.String SHOW_DITAG_FEATURE_COUNTS_BY_TYPE

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Constant Field Values

SHOW_AB_INITIO_COUNTS_BY_TYPE

public static final java.lang.String SHOW_AB_INITIO_COUNTS_BY_TYPE

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Constant Field Values

Constructor Detail

Controller

public Controller(Model model,
                  View view)

Method Detail

getModel

public Model getModel()

getView

public View getView()

addKeyRouter

public void addKeyRouter(javax.swing.JTextField textField,
                         java.lang.String handlerKey)

addKeyRouter

public void addKeyRouter(java.awt.Component component,
                         java.lang.String handlerKey)

addKeyRouter

public void addKeyRouter(javax.swing.JComboBox dropDown,
                         java.lang.String handlerKey)

addActionRouter

public void addActionRouter(javax.swing.JButton button,
                            java.lang.String handlerKey)

addActionRouter

public void addActionRouter(javax.swing.JComboBox dropDown,
                            java.lang.String handlerKey)

addPopupRouter

public void addPopupRouter(javax.swing.JComboBox dropDown,
                           java.lang.String handlerKey)

handleEventForKey

public void handleEventForKey(java.lang.String key)

displayMessage

public void displayMessage(java.lang.String message)

doRead

public void doRead()

doUpdate

public void doUpdate()

log

public void log(java.lang.String message)