apollo.dataadapter.chado
Class ChadoTransaction

java.lang.Object
  apollo.dataadapter.chado.ChadoTransaction

Direct Known Subclasses:

ChadoUpdateTransaction

public class ChadoTransaction
extends java.lang.Object

Class that represents the chado XML counterpart of an Apollo transaction. Each chado transaction can be mapped to an SQL call.

Author:

wgm

Nested Class Summary

static class

ChadoTransaction.Operation INNER CLASS Operation

Field Summary

static ChadoTransaction.Operation	DELETE
static ChadoTransaction.Operation	FORCE
static ChadoTransaction.Operation	INSERT
static ChadoTransaction.Operation	LOOKUP
static java.lang.String	MAP_POSITION_ID
static ChadoTransaction.Operation	UPDATE

Constructor Summary

ChadoTransaction()

Method Summary

void	addProperty(java.lang.String propName, java.lang.String value)
java.lang.String	getID()
ChadoTransaction.Operation	getOperation()
java.util.Map	getProperties()
java.lang.String	getTableName()
java.util.Map	getUniqueKeyProps() Return the properties that are part of the unique key, needed for LOOKUP as you only want to lookup on the unique key.
boolean	isExon()
void	setID(java.lang.String id) Set the id name for this Transaction.
void	setIsExon(boolean isExon) needed to distinguish exons different unique key - name instead of uniquename
void	setOperation(ChadoTransaction.Operation op)
void	setProperties(java.util.Map properties)
void	setTableName(java.lang.String name)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

DELETE

public static final ChadoTransaction.Operation DELETE

UPDATE

public static final ChadoTransaction.Operation UPDATE

INSERT

public static final ChadoTransaction.Operation INSERT

LOOKUP

public static final ChadoTransaction.Operation LOOKUP

FORCE

public static final ChadoTransaction.Operation FORCE

MAP_POSITION_ID

public static final java.lang.String MAP_POSITION_ID

See Also:

Constant Field Values

Constructor Detail

ChadoTransaction

public ChadoTransaction()

Method Detail

setTableName

public void setTableName(java.lang.String name)

getTableName

public java.lang.String getTableName()

setProperties

public void setProperties(java.util.Map properties)

getProperties

public java.util.Map getProperties()

addProperty

public void addProperty(java.lang.String propName,
                        java.lang.String value)

setID

public void setID(java.lang.String id)

Set the id name for this Transaction. This is the id used in Chado transaction xml.

Parameters:

id -

getID

public java.lang.String getID()

setIsExon

public void setIsExon(boolean isExon)

needed to distinguish exons different unique key - name instead of uniquename

isExon

public boolean isExon()

getUniqueKeyProps

public java.util.Map getUniqueKeyProps()

Return the properties that are part of the unique key, needed for LOOKUP as you only want to lookup on the unique key. returns all props if no unique key defined currently only synonym has unique key defined

getOperation

public ChadoTransaction.Operation getOperation()

setOperation

public void setOperation(ChadoTransaction.Operation op)

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object