apollo.dataadapter
Interface SyntenyAdapterI

All Known Implementing Classes:

GFFSyntenyAdapter, SyntenyAdapter

public interface SyntenyAdapterI

Method Summary

void	addSyntenyRegionForChromosome(java.lang.String chr, SyntenyRegion region)
KaryotypeAdapterI	getKaryotypeAdapter()
java.lang.String	getName()
java.util.Vector	getSyntenyRegionsByChromosome(Chromosome chr)
java.lang.String	getType()
void	setName(java.lang.String name)
void	setType(java.lang.String type)

Method Detail

getType

java.lang.String getType()

setType

void setType(java.lang.String type)

getName

java.lang.String getName()

setName

void setName(java.lang.String name)

getKaryotypeAdapter

KaryotypeAdapterI getKaryotypeAdapter()

getSyntenyRegionsByChromosome

java.util.Vector getSyntenyRegionsByChromosome(Chromosome chr)

addSyntenyRegionForChromosome

void addSyntenyRegionForChromosome(java.lang.String chr,
                                   SyntenyRegion region)