apollo.config
Interface OverlapI

All Known Implementing Classes:

NoOverlap, ORF_Overlap, SimpleOverlap

public interface OverlapI

areOverlapping determines if two SeqFeatureIs overlap using the currently defined gene definition (from Config.getGeneDefinition(). Obviously this method can be called with FeatureSets such as Genes or Transcripts - it should handle such cases.

Method Summary

boolean

areOverlapping(SeqFeatureI sa, SeqFeatureI sb)

Method Detail

areOverlapping

boolean areOverlapping(SeqFeatureI sa,
                       SeqFeatureI sb)