apollo.config
Class LinkType

java.lang.Object
  apollo.config.LinkType

All Implemented Interfaces:

java.lang.Cloneable

public class LinkType
extends java.lang.Object
implements java.lang.Cloneable

Value class for synteny link types (used by game synteny) if we go to java 1.5 this should be replaced by an enumeration

Field Summary

protected static org.apache.log4j.Logger

logger

Constructor Summary

LinkType(java.lang.String typeString)

Method Summary

boolean	isLinkById()
boolean	isNoLink()
boolean	isParentLevel()
boolean	isPeptide() Link to transcript in transcript coords.
boolean	isSelf() Link to features of same type (eg syntenic block)
boolean	isTranscript() Link to a transcript feature with peptide coords
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

logger

protected static final org.apache.log4j.Logger logger

Constructor Detail

LinkType

public LinkType(java.lang.String typeString)

Method Detail

isPeptide

public boolean isPeptide()

Link to transcript in transcript coords.

isTranscript

public boolean isTranscript()

Link to a transcript feature with peptide coords

isSelf

public boolean isSelf()

Link to features of same type (eg syntenic block)

isNoLink

public boolean isNoLink()

isParentLevel

public boolean isParentLevel()

isLinkById

public boolean isLinkById()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object