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| Interface Summary | |
|---|---|
| AnalysisDataAdapterI | DataAdapterI interface Used to load annotated and non-annotated data from whatever datasource |
| ProgramHandlerI | |
| SeqAnalysisI | |
| Class Summary | |
|---|---|
| AnalysisGUI | Provides GUI for running different analysis tools and importing the results into Apollo. |
| BlastHandler | |
| BlastXMLParser | |
| BlastXMLParserTest | |
| GenericProgramHandler | |
| HashDB | |
| HashMatch | |
| PrimerBlastHtmlParser | |
| PrimerBlastHtmlParserTest | |
| ProgramHandlerFactory | |
| RemoteBlastNCBI | Sends and retrieves a BLAST request to NCBI's qBLAST service. |
| RemoteBlastNCBI.BlastOptions | Options for running qBLAST. |
| RemoteBlastNCBITest | |
| RemotePrimerBlastNCBI | Sends and retrieves a request to NCBI's Primer-BLAST CGI. |
| RemotePrimerBlastNCBI.PrimerBlastOptions | Options for running Primer-BLAST. |
| RemotePrimerBlastNCBITest | |
| SeqAnalysisBase | |
| SeqAnalysisBDGP | |
| SeqAnalysisFactory | |
| SeqAnalysisGUI | |
| SeqAnalysisLocal | |
| SeqAnalysisNCBI | |
| SeqAnalysisRemote | |
| SeqAnalysisTest | |
| StreamMatch | |
| Enum Summary | |
|---|---|
| RemoteBlastNCBI.BlastType | Type of BLAST analysis to run. |
| RemotePrimerBlastNCBI.PrimerBlastOptions.Database | Database to search against for primer specificity. |
| Exception Summary |
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