apollo.analysis
Interface ProgramHandlerI

All Known Implementing Classes:

BlastHandler, GenericProgramHandler

public interface ProgramHandlerI

Method Summary

java.lang.String	createUnixShellCommand(SeqAnalysisLocal seqAnalysis) different analysis programs require different ways of running them
CurationSet	parseAnalysisResults(SeqAnalysisI seqAnalysis) different programs must be parsed differently implementations may also choose to also filter the results in some configurable way.

Method Detail

createUnixShellCommand

java.lang.String createUnixShellCommand(SeqAnalysisLocal seqAnalysis)

different analysis programs require different ways of running them

parseAnalysisResults

CurationSet parseAnalysisResults(SeqAnalysisI seqAnalysis)

different programs must be parsed differently implementations may also choose to also filter the results in some configurable way. it is up to the individual implementations to respect these